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[{"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319337075.825362, "message": "@Colbert : Can you use incanters machine learning capabilities to read through 100 nmr calculations with different chemical shift inputs, and different quality scores (both given in HINO data on /raid/Users/vyas/nmr/cyana/cyana_exec/pub/ as input, and determine which chemical shifts have the most powerful effect on protein structure quality ? In HINO we removed data, and looked at overall performance, but im wondering wether , in reality, its not quanitty of chemical shifts, but rather, maybe there is a core group of shifts which, if assigned, alllow for structure to be solved rapidly.", "group_id": 11975, "id": 2410819}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319347646.960475, "message": "Guys Im noticing that \"lein deps\" can freeze for building a large project. no prob, just restart. sometimes deps has to run twice on a fresh set up of your dev env.", "group_id": 11975, "id": 2411514}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319661170.729248, "message": "yeah", "group_id": 11975, "id": 2440797}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319661222.7429669, "message": "rj?", "group_id": 11975, "id": 2440801}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319477661.538626, "message": "matt", "group_id": 11975, "id": 2422000}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319477659.78388, "message": "colbert are you there", "group_id": 11975, "id": 2421999}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319480425.2559371, "message": "itng draft here (i edited the abstrct) : https://files.me.com/jayunit100/9kr0pm", "group_id": 11975, "id": 2422399}, {"user_id": 42601, "stars": [], "topic_id": 46932, "date_created": 1319482428.002471, "message": "Hi Jay I'm here", "group_id": 11975, "id": 2422657}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319482578.0335259, "message": "hey guys", "group_id": 11975, "id": 2422685}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319482579.9110079, "message": "no cats here", "group_id": 11975, "id": 2422687}, {"user_id": 42601, "stars": [], "topic_id": 46932, "date_created": 1319488272.729773, "message": "upvote my answer: http://stackoverflow.com/questions/2136792/using-clojure-and-leiningen-with-ides/7877255#7877255", "group_id": 11975, "id": 2423391}, {"user_id": 42601, "stars": [], "topic_id": 46932, "date_created": 1319488251.1605861, "message": "matt you there?", "group_id": 11975, "id": 2423385}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319492192.7512181, "message": "http://stackoverflow.com/questions/7864499/can-i-transpose-a-list-of-maps-into-a-map-of-lists-in-clojure", "group_id": 11975, "id": 2423902}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319492077.271647, "message": "did u look at the draft", "group_id": 11975, "id": 2423892}, {"user_id": 42601, "stars": [], "topic_id": 46932, "date_created": 1319498741.468225, "message": "Abstract looks pretty good", "group_id": 11975, "id": 2424796}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319542316.524992, "message": "yeah break it into 3 sections, matts haskell, bio-java clojure interop, and then the cs data visualiation + incanter stuff .", "group_id": 11975, "id": 2428568}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319542351.904212, "message": "colbert can you add an image - it makes it easier to identify your posts", "group_id": 11975, "id": 2428570}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319544361.5781219, "message": "http://duncan.hull.name/2010/07/27/pubmed-20-million/", "group_id": 11975, "id": 2428651}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319544440.176882, "message": "http://mark.reid.name/sap/online-learning-in-clojure.html (@sesanker you saw this ?)", "group_id": 11975, "id": 2428654}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319544121.1704891, "message": "one paper is added to pubmed per minute", "group_id": 11975, "id": 2428640}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319545826.7687509, "message": "I wanted to read the original abstract", "group_id": 11975, "id": 2428750}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319545575.4770761, "message": "FROM MATT YEST : THOUGHTS?\n- I've been adding examples, to get a feel for things and make some cool plots\n- but I've discovered something that's unnecessarily hard to do\n- I've thought of a way to refactor some of the code\n - should get rid of some of the crappiest code\n - will be more general\n - more well-factored, and easy to test (I think)\n- this will immediately impact readstats, and eventually also readcyana, modelreducer, and statistics\n\nsummary of proposed changes:\n- instead of shoving average shifts into the data model directly (which is hard), they'll be added after reducing the model ... this will make it a lot easier to code and test\n- add code to modelreducer to provide functions for creating models", "group_id": 11975, "id": 2428721}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319545631.999409, "message": "@mattfenwick what is modelreducer ?", "group_id": 11975, "id": 2428725}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319545683.4846051, "message": "ok", "group_id": 11975, "id": 2428734}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319545703.417465, "message": "https://files.me.com/jayunit100/9kr0pm", "group_id": 11975, "id": 2428739}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319545677.673306, "message": "@jay can you post the original itng paper?", "group_id": 11975, "id": 2428732}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319545712.065644, "message": "I only changed the abstract !", "group_id": 11975, "id": 2428740}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319545732.663027, "message": "k", "group_id": 11975, "id": 2428742}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319545717.9659679, "message": "okay, modelreducer is currently responsible for: transforming our protein model to lists/maps", "group_id": 11975, "id": 2428741}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319545741.3070669, "message": "so that client code doesn't have to wade through 5+ levels of nested maps", "group_id": 11975, "id": 2428744}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319545755.804024, "message": "fag", "group_id": 11975, "id": 2428745}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319553522.0499611, "message": "hey guys I've posted a ConnjurRV_TODOS file on github", "group_id": 11975, "id": 2429474}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319553544.674742, "message": "we've accomplished a lot but I think we need more concrete goals for our next push", "group_id": 11975, "id": 2429476}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319553558.187067, "message": "compiling an executable would be a great next step", "group_id": 11975, "id": 2429477}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319553577.6756389, "message": "then we need to decide what to do about shiftx", "group_id": 11975, "id": 2429480}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319554930.532814, "message": "http://lambda-the-ultimate.org/node/4387", "group_id": 11975, "id": 2429584}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319554405.8795691, "message": "how about we set a goal for a tagged release:\n\ngit tag v0.0.1\n\nand then compile it, give it to mike to use on his shift files", "group_id": 11975, "id": 2429548}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319555917.838573, "message": "clojure from the command line:\n\nhttp://stackoverflow.com/questions/1341154/building-a-clojure-app-with-a-command-line-interface", "group_id": 11975, "id": 2429725}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319555936.044966, "message": "(but we still don't know how to create the executable)", "group_id": 11975, "id": 2429727}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319557239.3861871, "message": "I think we need to move all of the bioclojure stuff out of ConnjurRV, or vice versa\n\nthere's a bunch of junk there that is confusing from the point of view of creating a ConnjurRV application", "group_id": 11975, "id": 2429839}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319557896.3982019, "message": "apparently, leiningen has a problem with making uberjars: https://github.com/technomancy/leiningen/issues/31\n\nI ran in to this issue. Don't know how to fix it, or what's causing the problem", "group_id": 11975, "id": 2429923}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319628625.3000121, "message": "GOOD morning", "group_id": 11975, "id": 2437340}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319661026.1470561, "message": "yeah half and half is fine with me", "group_id": 11975, "id": 2440770}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319660961.8916681, "message": "you think 1/2 1/2 ?", "group_id": 11975, "id": 2440755}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319661084.875077, "message": "clojure !", "group_id": 11975, "id": 2440782}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319661055.8816099, "message": "your admin now", "group_id": 11975, "id": 2440778}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319661064.4709051, "message": "i like 100%", "group_id": 11975, "id": 2440779}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319661140.8887031, "message": "its a jvm language, send her the jar.", "group_id": 11975, "id": 2440788}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319661076.777283, "message": "100% clojure or 100% java?", "group_id": 11975, "id": 2440781}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319661469.190069, "message": "what do you mean ?", "group_id": 11975, "id": 2440847}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319661431.3174219, "message": "oh calling", "group_id": 11975, "id": 2440843}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319660969.487272, "message": "1/2 java 1/2 clojure ?", "group_id": 11975, "id": 2440760}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319660950.7385359, "message": "yeah", "group_id": 11975, "id": 2440751}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319660966.8207469, "message": "it's great that you didn't edit any of it ....", "group_id": 11975, "id": 2440758}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319661045.5420091, "message": "but do you think that's a good idea quality-wise?", "group_id": 11975, "id": 2440777}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319660977.8277669, "message": "and that it's publicly visible ... with my name attached", "group_id": 11975, "id": 2440762}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319661130.993566, "message": "Heidi doesnt need to know the details............", "group_id": 11975, "id": 2440785}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319661251.452105, "message": "apparently we should have gone with postgres", "group_id": 11975, "id": 2440807}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319661258.4301219, "message": "for compatibility with other groups", "group_id": 11975, "id": 2440808}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319661465.446728, "message": "compatibile ?", "group_id": 11975, "id": 2440846}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319662676.593061, "message": "and also the safe-get question:\n\n(defn get-e\n \"check for key in map, and throw an exception if key not found\"\n [mapp keyy]\n (if (contains? mapp keyy)\n (mapp keyy)\n (throw (new Exception \n (str \"can't find key \" keyy \" in map\")))))", "group_id": 11975, "id": 2441026}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319662651.0976441, "message": "so can you ask sean corfield the metadata question?", "group_id": 11975, "id": 2441025}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319728762.9634359, "message": "man g just pissed all over everything that's not java", "group_id": 11975, "id": 2446653}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319719476.7111149, "message": "jay is such a jerk", "group_id": 11975, "id": 2445827}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319728709.319608, "message": "Hello", "group_id": 11975, "id": 2446646}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319728407.0354259, "message": "* so screwed about clojure", "group_id": 11975, "id": 2446624}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319729156.589004, "message": "Oh well. Did we have a meeting or somethin", "group_id": 11975, "id": 2446682}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319727648.0101221, "message": "we're so screwed", "group_id": 11975, "id": 2446558}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319729228.750036, "message": "then gerard chips in with his five cents \"the difference between writing scripts and java is that you use java to write real, maintainable software\"", "group_id": 11975, "id": 2446691}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319729409.1158271, "message": "yeah mike was pissed that you blew him off", "group_id": 11975, "id": 2446716}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319729191.092438, "message": "Gerard and mike both talked shit on python", "group_id": 11975, "id": 2446689}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319728893.3380001, "message": "How did g get involved oh no", "group_id": 11975, "id": 2446665}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319729132.7400191, "message": "Oh that's why mike is mad he said I blew off seminar speacker", "group_id": 11975, "id": 2446680}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319728874.008997, "message": "what time is seminar", "group_id": 11975, "id": 2446664}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319729077.7105629, "message": "scott mentioned pymol", "group_id": 11975, "id": 2446676}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319730001.567713, "message": "so you're going to blow off the seminar as well?", "group_id": 11975, "id": 2446753}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319729111.66243, "message": "then I wanted to know what was so great about pymol", "group_id": 11975, "id": 2446679}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319729175.938951, "message": "then mike pissed on python", "group_id": 11975, "id": 2446683}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319729193.16868, "message": "and on the nmr community for writing \"scripts\"", "group_id": 11975, "id": 2446690}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319729254.767827, "message": "seminar at 12", "group_id": 11975, "id": 2446696}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319733174.5750721, "message": "Kill me now", "group_id": 11975, "id": 2447024}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319742467.4538469, "message": "hello", "group_id": 11975, "id": 2447889}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319742483.220197, "message": "colbert will your machine learning work by end of the day?", "group_id": 11975, "id": 2447895}, {"user_id": 42601, "stars": [], "topic_id": 46932, "date_created": 1319755157.100764, "message": "End of tomorrow, not today", "group_id": 11975, "id": 2449505}, {"user_id": 42601, "stars": [], "topic_id": 46932, "date_created": 1319807487.463563, "message": "hey guys", "group_id": 11975, "id": 2453628}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319819146.017251, "message": "Hi I'm headed in", "group_id": 11975, "id": 2455084}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319823082.9735041, "message": "HELOOOOO ?", "group_id": 11975, "id": 2455497}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319822121.19329, "message": "hello", "group_id": 11975, "id": 2455361}, {"user_id": 42601, "stars": [], "topic_id": 46932, "date_created": 1319822853.766119, "message": "Install", "group_id": 11975, "id": 2455455}, {"user_id": 42600, "stars": [], "topic_id": 46932, "date_created": 1319822928.4219921, "message": "huh", "group_id": 11975, "id": 2455466}, {"user_id": 42601, "stars": [], "topic_id": 46932, "date_created": 1319854276.2823191, "message": "Not sure. There may be a heavy storm on Sat in the afternoon.", "group_id": 11975, "id": 2458379}, {"user_id": 42601, "stars": [], "topic_id": 46932, "date_created": 1319891590.6761129, "message": "I'm rather try to get my project working now", "group_id": 11975, "id": 2460701}, {"user_id": 42601, "stars": [], "topic_id": 46932, "date_created": 1319896782.1947169, "message": "Hey", "group_id": 11975, "id": 2460968}, {"user_id": 42601, "stars": [], "topic_id": 46932, "date_created": 1319896786.3694129, "message": "you there", "group_id": 11975, "id": 2460969}, {"user_id": 42601, "stars": [], "topic_id": 46932, "date_created": 1319897054.890089, "message": "Jay?", "group_id": 11975, "id": 2460994}, {"user_id": 42601, "stars": [], "topic_id": 46932, "date_created": 1319897721.6213939, "message": "I'm coming in now I think this could be a good dojo", "group_id": 11975, "id": 2461048}, {"user_id": 42601, "stars": [], "topic_id": 46932, "date_created": 1319910649.953316, "message": " [mysql/mysql-connector-java \"5.1.6\"]\n", "group_id": 11975, "id": 2462306}, {"user_id": 42601, "stars": [], "topic_id": 46932, "date_created": 1319910664.1181791, "message": "(ns sandbox.Database\n (:import (java.io InputStream InputStreamReader BufferedReader)\n (java.net URL HttpURLConnection)))\n\n(use 'clojure.contrib.sql) ;;' satisfy prettify\n\n(let [db-host \"localhost\"\n db-port 8889\n db-name \"db_name\"]\n (def db {:classname \"com.mysql.jdbc.Driver\"\n :subprotocol \"mysql\"\n :subname (str \"//\" db-host \":\" db-port \"/\" db-name)\n :user \"root\"\n :password \"root\"})\n (with-connection db\n (with-query-results rs [\"select * from languages\"]\n (dorun ( map \n #(println (:language :iso_code %)) \n rs)))))\n", "group_id": 11975, "id": 2462308}, {"user_id": 42601, "stars": [], "topic_id": 46932, "date_created": 1319911025.5988231, "message": "com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: Access denied for user 'colbert'@'%' to database 'dojo' (Database.clj:6)\n", "group_id": 11975, "id": 2462339}, {"user_id": 42601, "stars": [], "topic_id": 46932, "date_created": 1319911045.9172421, "message": "colbertlikesmath", "group_id": 11975, "id": 2462342}, {"user_id": 42601, "stars": [], "topic_id": 46932, "date_created": 1319911208.9593279, "message": " GRANT ALL ON *.* TO colbert@% ", "group_id": 11975, "id": 2462364}, {"user_id": 42682, "stars": [], "topic_id": 46932, "date_created": 1319911272.2290871, "message": "mysql> show grants for colbert;\r\n+--------------------------------------------------------------------------------------------------------+\r\n| Grants for colbert@% |\r\n+--------------------------------------------------------------------------------------------------------+\r\n| GRANT USAGE ON *.* TO 'colbert'@'%' IDENTIFIED BY PASSWORD '*59A581AB7F5BDF3D3AE19B60C0B0354E8E37ADB4' |\r\n+--------------------------------------------------------------------------------------------------------+\r\n1 row in set (0.00 sec)", "group_id": 11975, "id": 2462370}] |